3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03006

Details:

PFam ID : PF03006

PFam Domain Description : Haemolysin-III related

Number of Sequence in 50% Dataset : 268

Number of Sequence in Full Dataset : 1313

Average sequence length: 202.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03006	D0N5C4_PHYIT_80_481	98.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03006	D0N5C4_PHYIT_80_481	99.9

Sequence based PCA Plot of the family - PF03006 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=213 Length=8
Motif2 Start=9 Length=8
Motif3 Start=190 Length=8
Motif4 Start=344 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay