3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03000

Details:

PFam ID : PF03000

PFam Domain Description : NPH3 family

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 299

Average sequence length: 216.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03000	Q25AB6_ORYSA_793_851	73.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03000	F2CSJ7_HORVD_174_355	100

Sequence based PCA Plot of the family - PF03000 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=169 Length=11
Motif2 Start=281 Length=8
Motif3 Start=310 Length=14
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay