3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02998

Details:

PFam ID : PF02998

PFam Domain Description : Lentiviral Tat protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 19

Average sequence length: 79.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02998	O36981_CAEV_1_39	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02998	Q9DKV6_CAEV_1_83	100

Sequence based PCA Plot of the family - PF02998 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay