3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02991

Details:

PFam ID : PF02991

PFam Domain Description : Autophagy protein Atg8 ubiquitin like

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 215

Average sequence length: 96.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02991	A0EB08_PARTE_13_124	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02991	A0DDT4_PARTE_27_146	100

Sequence based PCA Plot of the family - PF02991 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay