3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02990

Details:

PFam ID : PF02990

PFam Domain Description : Endomembrane protein 70

Number of Sequence in 50% Dataset : 154

Number of Sequence in Full Dataset : 543

Average sequence length: 394.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02990	B5RNX0_BORDL_1_186	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02990	D8M9H2_BLAHO_31_139	100

Sequence based PCA Plot of the family - PF02990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=26 Length=8
Motif3 Start=514 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay