3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02985

Details:

PFam ID : PF02985

PFam Domain Description : HEAT repeat

Number of Sequence in 50% Dataset : 232

Number of Sequence in Full Dataset : 595

Average sequence length: 30.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02985	A4RGJ7_MAGO7_109_177	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02985	A8PXG0_MALGO_226_256	73

Sequence based PCA Plot of the family - PF02985 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay