3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02984

Details:

PFam ID : PF02984

PFam Domain Description : Cyclin, C-terminal domain

Number of Sequence in 50% Dataset : 300

Number of Sequence in Full Dataset : 1192

Average sequence length: 116.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02984	A4RGJ7_MAGO7_109_177	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02984	D7KL97_ARALL_17_85	99.9

Sequence based PCA Plot of the family - PF02984 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=42 Length=8
Motif3 Start=62 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay