3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02979

Details:

PFam ID : PF02979

PFam Domain Description : Nitrile hydratase, alpha chain

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 176

Average sequence length: 145.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02979	Q9SXP0_HYONI_43_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02979	Q8VUR1_9BACT_1_111	100

Sequence based PCA Plot of the family - PF02979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=101 Length=8
Motif3 Start=53 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay