3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02976

Details:

PFam ID : PF02976

PFam Domain Description : DNA mismatch repair enzyme MutH

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 176

Average sequence length: 101.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02976	E6MQC4_9BACT_56_180	54.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02976	B0G6I5_9FIRM_49_133	100

Sequence based PCA Plot of the family - PF02976 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=40 Length=8
Motif2 Start=31 Length=8
Motif3 Start=7 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay