3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02975

Details:

PFam ID : PF02975

PFam Domain Description : Methylamine dehydrogenase, L chain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 38

Average sequence length: 114.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02975	E4WAJ1_RHOE1_100_220	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02975	E4WAJ1_RHOE1_100_220	100

Sequence based PCA Plot of the family - PF02975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=62 Length=8
Motif3 Start=47 Length=8
Motif4 Start=12 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay