3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02970

Details:

PFam ID : PF02970

PFam Domain Description : Tubulin binding cofactor A

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 167

Average sequence length: 91.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02970	E7R6B4_PICAD_4_106	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02970	E7R6B4_PICAD_4_106	100

Sequence based PCA Plot of the family - PF02970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=46 Length=8
Motif2 Start=8 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay