3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02969

Details:

PFam ID : PF02969

PFam Domain Description : TATA box binding protein associated factor (TAF)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 122

Average sequence length: 62.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02969	D8LUT4_BLAHO_71_118	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02969	A7AMC5_BABBO_6_81	100

Sequence based PCA Plot of the family - PF02969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay