3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02966

Details:

PFam ID : PF02966

PFam Domain Description : Mitosis protein DIM1

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 131

Average sequence length: 121.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02966	C5YJC0_SORBI_5_133	21.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02966	B9HGK6_POPTR_4_69	100

Sequence based PCA Plot of the family - PF02966 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=8 Length=8
Motif2 Start=26 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay