3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02965

Details:

PFam ID : PF02965

PFam Domain Description : Vitamin B12 dependent methionine synthase, activation domain

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 729

Average sequence length: 131.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02965	Q8KQE7_9RHOO_6_167	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02965	E6W3E3_DESIS_1009_1142	100

Sequence based PCA Plot of the family - PF02965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=18
Motif2 Start=97 Length=8
Motif3 Start=60 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay