3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02964

Details:

PFam ID : PF02964

PFam Domain Description : Methane monooxygenase, hydrolase gamma chain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 11

Average sequence length: 145.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02964	Q8KQE7_9RHOO_6_167	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02964	Q8KQE7_9RHOO_6_167	100

Sequence based PCA Plot of the family - PF02964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay