3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02962

Details:

PFam ID : PF02962

PFam Domain Description : 5-carboxymethyl-2-hydroxymuconate isomerase

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 202

Average sequence length: 117.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02962	B0TW35_FRAP2_2_102	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02962	C9YCU8_9BURK_2_131	100

Sequence based PCA Plot of the family - PF02962 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay