3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02961

Details:

PFam ID : PF02961

PFam Domain Description : Barrier to autointegration factor

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 51

Average sequence length: 82.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02961	F2U507_9EUKA_3_92	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02961	F2U507_9EUKA_3_92	100

Sequence based PCA Plot of the family - PF02961 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=27
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay