3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02959

Details:

PFam ID : PF02959

PFam Domain Description : HTLV Tax

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 27

Average sequence length: 95.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02959	B9TRP5_9DELA_1_57	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02959	Q9DTV8_9DELA_1_32	69

Sequence based PCA Plot of the family - PF02959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=25 Length=8
Motif3 Start=131 Length=8
Motif4 Start=157 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay