3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02958

Details:

PFam ID : PF02958

PFam Domain Description : Ecdysteroid kinase

Number of Sequence in 50% Dataset : 333

Number of Sequence in Full Dataset : 1047

Average sequence length: 242.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02958	B9VXD5_HCMV_58_118	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02958	B5WJ50_9BURK_48_193	99.8

Sequence based PCA Plot of the family - PF02958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=228 Length=8
Motif3 Start=15 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay