3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02957

Details:

PFam ID : PF02957

PFam Domain Description : TT viral ORF2

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 255

Average sequence length: 103.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02957	B9VXD5_HCMV_58_118	85

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02957	E3NZL2_9VIRU_45_194	98.8

Sequence based PCA Plot of the family - PF02957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=17 Length=17
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay