3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02954

Details:

PFam ID : PF02954

PFam Domain Description : Bacterial regulatory protein, Fis family

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 5410

Average sequence length: 41.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02954	E5Y5E9_BILWA_972_1016	73.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02954	C6SB15_NEIME_35_67	100

Sequence based PCA Plot of the family - PF02954 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=14
Motif2 Start=19 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay