3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02953

Details:

PFam ID : PF02953

PFam Domain Description : Tim10/DDP family zinc finger

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 574

Average sequence length: 64.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02953	A0CR10_PARTE_24_71	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02953	C2_OXYNO_9_76	100

Sequence based PCA Plot of the family - PF02953 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=30 Length=17
Motif2 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay