3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02952

Details:

PFam ID : PF02952

PFam Domain Description : L-fucose isomerase, C-terminal domain

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 308

Average sequence length: 140.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02952	A5ZM40_9FIRM_332_467	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02952	Q1AXS8_RUBXD_325_468	99.6

Sequence based PCA Plot of the family - PF02952 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=14
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay