3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02949

Details:

PFam ID : PF02949

PFam Domain Description : 7tm Odorant receptor

Number of Sequence in 50% Dataset : 707

Number of Sequence in Full Dataset : 1870

Average sequence length: 245.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02949	AMEL_CAVPO_189_226	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02949	B4ISD6_DROPE_17_86	99.7

Sequence based PCA Plot of the family - PF02949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=108 Length=8
Motif2 Start=289 Length=8
Motif3 Start=219 Length=8
Motif4 Start=328 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay