3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02948

Details:

PFam ID : PF02948

PFam Domain Description : Amelogenin

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 137

Average sequence length: 114.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02948	AMEL_CAVPO_189_226	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02948	AMEL_CAVPO_189_226	100

Sequence based PCA Plot of the family - PF02948 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay