3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02943

Details:

PFam ID : PF02943

PFam Domain Description : FEZ-like protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 157

Average sequence length: 98.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02943	A6Q783_SULNB_17_124	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02943	A6Q783_SULNB_17_124	100

Sequence based PCA Plot of the family - PF02943 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=17 Length=8
Motif3 Start=77 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay