3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02941

Details:

PFam ID : PF02941

PFam Domain Description : Ferredoxin thioredoxin reductase catalytic beta chain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 61

Average sequence length: 67.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02941	C1N924_MICPC_45_118	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02941	C1N924_MICPC_45_118	100

Sequence based PCA Plot of the family - PF02941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=22 Length=21
Motif3 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay