3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02940

Details:

PFam ID : PF02940

PFam Domain Description : mRNA capping enzyme, beta chain

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 133

Average sequence length: 209.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02940	Q7S0G4_NEUCR_767_1020	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02940	C5L2H9_9ALVE_76_309	100

Sequence based PCA Plot of the family - PF02940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=181 Length=8
Motif2 Start=169 Length=8
Motif3 Start=196 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay