3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02939

Details:

PFam ID : PF02939

PFam Domain Description : UcrQ family

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 113

Average sequence length: 77.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02939	E2AXV3_9HYME_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02939	A9VD05_MONBE_1_81	100

Sequence based PCA Plot of the family - PF02939 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=17
Motif2 Start=1 Length=8
Motif3 Start=73 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay