3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02938

Details:

PFam ID : PF02938

PFam Domain Description : GAD domain

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 1186

Average sequence length: 95.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02938	E2AXV3_9HYME_2_74	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02938	E9HRW5_DAPPU_263_349	98.2

Sequence based PCA Plot of the family - PF02938 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=11 Length=8
Motif3 Start=87 Length=8
Motif4 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay