3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02937

Details:

PFam ID : PF02937

PFam Domain Description : Cytochrome c oxidase subunit VIc

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 66

Average sequence length: 67.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02937	E2AXV3_9HYME_2_74	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02937	A8PF25_BRUMA_5_73	98.4

Sequence based PCA Plot of the family - PF02937 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay