3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02936

Details:

PFam ID : PF02936

PFam Domain Description : Cytochrome c oxidase subunit IV

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 171

Average sequence length: 126.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02936	F0W808_9STRA_5_74	53.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02936	A8NJQ2_BRUMA_46_184	100

Sequence based PCA Plot of the family - PF02936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=18
Motif2 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay