3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02935

Details:

PFam ID : PF02935

PFam Domain Description : Cytochrome c oxidase subunit VIIc

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 99

Average sequence length: 68.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02935	E3M328_CAERE_1_82	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02935	B8JJA9_MOUSE_2_49	100

Sequence based PCA Plot of the family - PF02935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay