3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02934

Details:

PFam ID : PF02934

PFam Domain Description : GatB/GatE catalytic domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 1030

Average sequence length: 292.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02934	A7S2J7_NEMVE_365_451	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02934	GATB_SCHPO_7_323	100

Sequence based PCA Plot of the family - PF02934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=189 Length=14
Motif2 Start=77 Length=8
Motif3 Start=5 Length=8
Motif4 Start=333 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay