3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02933

Details:

PFam ID : PF02933

PFam Domain Description : Cell division protein 48 (CDC48), domain 2

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 387

Average sequence length: 69.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02933	A7S2J7_NEMVE_365_451	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02933	E8QYP4_ISOPI_157_219	71

Sequence based PCA Plot of the family - PF02933 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay