3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02932

Details:

PFam ID : PF02932

PFam Domain Description : Neurotransmitter-gated ion-channel transmembrane region

Number of Sequence in 50% Dataset : 399

Number of Sequence in Full Dataset : 1716

Average sequence length: 174.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02932	A7S2J7_NEMVE_365_451	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02932	C3XPW1_BRAFL_1149_1675	99.3

Sequence based PCA Plot of the family - PF02932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=98 Length=8
Motif4 Start=325 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay