3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02931

Details:

PFam ID : PF02931

PFam Domain Description : Neurotransmitter-gated ion-channel ligand binding domain

Number of Sequence in 50% Dataset : 425

Number of Sequence in Full Dataset : 1418

Average sequence length: 179.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02931	A8XIJ9_CAEBR_47_106	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02931	C3XXT6_BRAFL_181_261	99.9

Sequence based PCA Plot of the family - PF02931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=98 Length=8
Motif2 Start=113 Length=8
Motif3 Start=46 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay