3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02929

Details:

PFam ID : PF02929

PFam Domain Description : Beta galactosidase small chain

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 713

Average sequence length: 253.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02929	D7C9N2_STRBB_2_104	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02929	E1Z6H8_9CHLO_853_1218	100

Sequence based PCA Plot of the family - PF02929 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=251 Length=8
Motif3 Start=211 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay