3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02928

Details:

PFam ID : PF02928

PFam Domain Description : C5HC2 zinc finger

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 164

Average sequence length: 54.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02928	E1ZDD3_9CHLO_1179_1235	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02928	C4Q2A1_SCHMA_731_772	100

Sequence based PCA Plot of the family - PF02928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay