3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02927

Details:

PFam ID : PF02927

PFam Domain Description : N-terminal ig-like domain of cellulase

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 276

Average sequence length: 89.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02927	C9RL59_FIBSS_40_155	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02927	C9RL59_FIBSS_40_155	100

Sequence based PCA Plot of the family - PF02927 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay