3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02926

Details:

PFam ID : PF02926

PFam Domain Description : THUMP domain

Number of Sequence in 50% Dataset : 248

Number of Sequence in Full Dataset : 1374

Average sequence length: 93.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02926	D6TG89_9CHLR_70_167	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02926	D6TG89_9CHLR_70_167	97.0

Sequence based PCA Plot of the family - PF02926 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=77 Length=8
Motif3 Start=34 Length=8
Motif4 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay