3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02922

Details:

PFam ID : PF02922

PFam Domain Description : Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

Number of Sequence in 50% Dataset : 263

Number of Sequence in Full Dataset : 2675

Average sequence length: 85.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02922	D5TM38_BACT1_1_42	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02922	B9STY8_RICCO_120_212	99.7

Sequence based PCA Plot of the family - PF02922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=96 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay