3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02921

Details:

PFam ID : PF02921

PFam Domain Description : Ubiquinol cytochrome reductase transmembrane region

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 147

Average sequence length: 60.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02921	Q54NW9_DICDI_25_83	64.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02921	Q54NW9_DICDI_25_83	99.3

Sequence based PCA Plot of the family - PF02921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=26 Length=8
Motif3 Start=17 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay