3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02920

Details:

PFam ID : PF02920

PFam Domain Description : DNA binding domain of tn916 integrase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 60

Average sequence length: 61.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02920	E0QM46_9FIRM_1_31	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02920	Q5NE25_9THEM_120_186	88

Sequence based PCA Plot of the family - PF02920 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=25 Length=18
Motif2 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay