3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02919

Details:

PFam ID : PF02919

PFam Domain Description : Eukaryotic DNA topoisomerase I, DNA binding fragment

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 158

Average sequence length: 201.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02919	B4ZFZ2_AMPCA_89_128	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02919	Q24BB2_TETTH_134_364	100

Sequence based PCA Plot of the family - PF02919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=212 Length=8
Motif2 Start=58 Length=11
Motif3 Start=3 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay