3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02916

Details:

PFam ID : PF02916

PFam Domain Description : DNA polymerase processivity factor

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 66

Average sequence length: 108.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02916	Q76Z70_9CAUD_1_118	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02916	A5L9S6_STRPN_1_79	53

Sequence based PCA Plot of the family - PF02916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay