3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02914

Details:

PFam ID : PF02914

PFam Domain Description : Bacteriophage Mu transposase

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 52

Average sequence length: 183.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02914	A4NLS6_HAEIF_245_282	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02914	A3GNK0_VIBCH_260_485	100

Sequence based PCA Plot of the family - PF02914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=28
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay