3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02911

Details:

PFam ID : PF02911

PFam Domain Description : Formyl transferase, C-terminal domain

Number of Sequence in 50% Dataset : 377

Number of Sequence in Full Dataset : 1780

Average sequence length: 100.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02911	D2R6H2_PIRSD_482_630	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02911	D1WM76_STAEP_205_261	100

Sequence based PCA Plot of the family - PF02911 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=18 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay