3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02909

Details:

PFam ID : PF02909

PFam Domain Description : Tetracyclin repressor, C-terminal all-alpha domain

Number of Sequence in 50% Dataset : 360

Number of Sequence in Full Dataset : 857

Average sequence length: 141.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02909	A1EGY5_9HEPC_116_178	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02909	E2SC42_9ACTO_84_265	100

Sequence based PCA Plot of the family - PF02909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=75 Length=8
Motif2 Start=1 Length=18
Motif3 Start=167 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay