3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02906

Details:

PFam ID : PF02906

PFam Domain Description : Iron hydrogenase small subunit

Number of Sequence in 50% Dataset : 185

Number of Sequence in Full Dataset : 1185

Average sequence length: 234.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02906	Q993H1_9GAMA_154_301	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02906	Q4Y4C0_PLACH_181_377	99.9

Sequence based PCA Plot of the family - PF02906 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=342 Length=11
Motif2 Start=54 Length=11
Motif3 Start=446 Length=11
Motif4 Start=28 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay